STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQM61298.1Hypothetical protein; exospore_TM: BclB C-terminal domain protein. (1704 aa)    
Predicted Functional Partners:
AQM60696.1
Collagen triple helix repeat family protein.
 
    
0.534
NPD11_251
ftsK/SpoIIIE family protein; [D] COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins.
   
 
 0.484
AQM59289.1
Glycosyltransferase like 2 family protein; [M] COG0463 Glycosyltransferases involved in cell wall biogenesis.
 
     0.433
AQM59011.1
sigpep_I_arch: signal peptidase I; [U] COG0681 Signal peptidase I.
 
   
 0.432
NPD11_280
ST7 family protein.
  
     0.410
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.