STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bukButyr_kinase: butyrate kinase; [C] COG3426 Butyrate kinase; Belongs to the acetokinase family. (355 aa)    
Predicted Functional Partners:
ptb
P_butyryltrans: phosphate butyryltransferase; [C] COG0280 Phosphotransacetylase.
 
 0.999
pta
Pta: phosphate acetyltransferase; [C] COG0280 Phosphotransacetylase.
 
  
 0.889
lpdA
lipoamide_DH: dihydrolipoyl dehydrogenase; [C] COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes.
  
  
 0.866
nifJ
Pyruvate:ferredoxin (flavodoxin) oxidoreductase; pyruv_ox_red: pyruvate:ferredoxin (flavodoxin) oxidoreductase; [C] COG1014 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit.
     
 0.770
thlA
[I] COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
     
 0.633
AQM59361.1
3-hydroxyacyl-CoA dehydrogenase, NAD binding domain protein; [I] COG1250 3-hydroxyacyl-CoA dehydrogenase.
     
 0.627
AQM59286.1
enoyl-CoA hydratase/isomerase family protein; [I] COG1024 Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family.
     
 0.615
rex
Oxidoreductase, NAD-binding Rossmann fold family protein; Modulates transcription in response to changes in cellular NADH/NAD(+) redox state.
      
 0.610
AQM60417.1
FAD dependent oxidoreductase family protein; [R] COG2509 Uncharacterized FAD-dependent dehydrogenases.
       0.601
AQM58909.1
ybbR-like family protein; [S] COG4856 Uncharacterized protein conserved in bacteria.
       0.594
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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