STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQM58909.1ybbR-like family protein; [S] COG4856 Uncharacterized protein conserved in bacteria. (439 aa)    
Predicted Functional Partners:
dacA
disA bacterial checkpoint controller nucleotide-binding family protein; Catalyzes the condensation of 2 ATP molecules into cyclic di- AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria.
 
  
 0.965
AQM60417.1
FAD dependent oxidoreductase family protein; [R] COG2509 Uncharacterized FAD-dependent dehydrogenases.
       0.821
AQM58728.1
Hypothetical protein.
       0.663
AQM60186.1
dnaD_dom: DnaD domain protein; [L] COG3935 Putative primosome component and related proteins.
 
     0.650
ptb
P_butyryltrans: phosphate butyryltransferase; [C] COG0280 Phosphotransacetylase.
  
    0.633
AQM58700.1
istB-like ATP binding family protein; [L] COG1484 DNA replication protein.
 
     0.623
buk
Butyr_kinase: butyrate kinase; [C] COG3426 Butyrate kinase; Belongs to the acetokinase family.
       0.594
glmM
Phosphoglucosamine mutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family.
  
  
 0.542
AQM59335.1
Cell Wall Hydrolase family protein; [M] COG3773 Cell wall hydrolyses involved in spore germination.
       0.508
NPD11_199
Putative archaeal/vacuolar-type H+-ATPase subunit H; [D] COG3599 Cell division initiation protein.
  
     0.497
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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