STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NPD11_159POTRA domain, FtsQ-type family protein; Essential cell division protein. (254 aa)    
Predicted Functional Partners:
NPD11_153
Cell division FtsL family protein.
  
 
 0.983
AQM58779.1
Septum formation initiator family protein.
 
 
 
 0.952
secY
Preprotein translocase, SecY subunit; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.
  
 
 0.915
ftsW
ftsW: cell division protein FtsW; [D] COG0772 Bacterial cell division membrane protein; Belongs to the SEDS family.
  
 
 0.897
NPD11_160
Conserved hypothetical protein; [S] COG3879 Uncharacterized protein conserved in bacteria.
 
    0.879
NPD11_161
Conserved hypothetical protein; [S] COG3856 Uncharacterized conserved protein (small basic protein).
 
  
 0.868
NPD11_154
spoVD_pbp: stage V sporulation protein D; [M] COG0768 Cell division protein FtsI/penicillin-binding protein 2.
 
 
 0.867
AQM60089.1
Mur ligase middle domain protein; [M] COG0769 UDP-N-acetylmuramyl tripeptide synthase.
  
  
 0.845
cphA
Cya_phycin_syn: cyanophycin synthetase; [M] COG1181 D-alanine-D-alanine ligase and related ATP-grasp enzymes; Belongs to the MurCDEF family.
  
  
 0.845
NPD11_162
Conserved hypothetical protein; [S] COG3879 Uncharacterized protein conserved in bacteria.
 
    0.845
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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