STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NPD11_162Conserved hypothetical protein; [S] COG3879 Uncharacterized protein conserved in bacteria. (244 aa)    
Predicted Functional Partners:
NPD11_161
Conserved hypothetical protein; [S] COG3856 Uncharacterized conserved protein (small basic protein).
 
  
 0.970
NPD11_160
Conserved hypothetical protein; [S] COG3879 Uncharacterized protein conserved in bacteria.
 
    
0.846
NPD11_159
POTRA domain, FtsQ-type family protein; Essential cell division protein.
 
    0.845
sepF
Hypothetical protein; Cell division protein that is part of the divisome complex and is recruited early to the Z-ring. Probably stimulates Z-ring formation, perhaps through the cross-linking of FtsZ protofilaments. Its function overlaps with FtsA.
 
     0.758
NPD11_163
Hypothetical protein; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.
       0.682
AQM60430.1
3D domain protein; [S] COG3583 Uncharacterized protein conserved in bacteria.
 
     0.675
NPD11_165
YGGT family protein; [S] COG0762 Predicted integral membrane protein.
       0.652
NPD11_166
S4 domain protein; [S] COG2302 Uncharacterized conserved protein, contains S4-like domain.
       0.652
NPD11_167
divI1A_: DivIVA domain protein; [D] COG3599 Cell division initiation protein.
       0.636
ftsW
ftsW: cell division protein FtsW; [D] COG0772 Bacterial cell division membrane protein; Belongs to the SEDS family.
       0.595
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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