STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQM58793.1Tubby C 2 family protein; [S] COG4894 Uncharacterized conserved protein. (162 aa)    
Predicted Functional Partners:
AQM60713.1
Zinc-ribbon domain protein.
  
     0.603
NPD11_51
Hypothetical protein.
  
     0.493
AQM61139.1
NAD(P)-binding family protein; [H] COG1648 Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain).
  
     0.485
AQM61124.1
Voltage-dependent anion channel family protein; [P] COG1275 Tellurite resistance protein and related permeases.
  
     0.436
AQM59432.1
F5/8 type C domain protein.
  
     0.426
AQM59239.1
Conserved hypothetical protein; [S] COG4506 Uncharacterized protein conserved in bacteria.
   
    0.422
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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