STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQM60430.13D domain protein; [S] COG3583 Uncharacterized protein conserved in bacteria. (353 aa)    
Predicted Functional Partners:
AQM61392.1
3D domain protein; [S] COG3584 Uncharacterized protein conserved in bacteria.
 
  
0.910
rsmA
Ribosomal RNA small subunit methyltransferase A; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
  
  
 0.899
rnmV
Ribonuclease M5; Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step.
 
   
 0.844
AQM60609.1
nlpC/P60 family protein; [M] COG0791 Cell wall-associated hydrolases (invasion-associated proteins).
 
  
 0.827
AQM59620.1
Hydrolase, TatD family protein; [L] COG0084 Mg-dependent DNase.
     
 0.756
ispE
4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.
     
 0.746
NPD11_162
Conserved hypothetical protein; [S] COG3879 Uncharacterized protein conserved in bacteria.
 
     0.675
NPD11_160
Conserved hypothetical protein; [S] COG3879 Uncharacterized protein conserved in bacteria.
 
     0.655
NPD11_161
Conserved hypothetical protein; [S] COG3856 Uncharacterized conserved protein (small basic protein).
  
     0.620
entD
mannosyl-glycoendo-beta-N-acetylglucosamidase domain protein, possible enterotoxin; [G] COG4193 Beta- N-acetylglucosaminidase.
  
  
 0.609
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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