STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQM60287.1ABC transporter family protein; [V] COG1131 ABC-type multidrug transport system, ATPase component. (241 aa)    
Predicted Functional Partners:
AQM58823.1
Putative membrane protein.
 
    0.959
ecfA-2
ABC transporter family protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 
   
0.751
spmB
[S] COG0700 Uncharacterized membrane protein.
       0.731
spmA
Nucleoside recognition family protein; [R] COG2715 Uncharacterized membrane protein, required for spore maturation in B.subtilis.
       0.708
NPD11_686
ABC transporter family protein; [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component.
  
0.645
NPD11_567
ABC transporter family protein; [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component.
  
0.593
NPD11_902
ABC transporter family protein; [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component.
  
0.559
AQM59008.1
ABC transporter family protein; [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component.
  
0.552
AQM60453.1
ABC transporter family protein; [PH] COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components.
 
   
0.526
AQM60372.1
ABC transporter family protein; [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component.
  
0.480
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.