STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spmB[S] COG0700 Uncharacterized membrane protein. (174 aa)    
Predicted Functional Partners:
spmA
Nucleoside recognition family protein; [R] COG2715 Uncharacterized membrane protein, required for spore maturation in B.subtilis.
  
 0.999
AQM60287.1
ABC transporter family protein; [V] COG1131 ABC-type multidrug transport system, ATPase component.
       0.731
AQM58823.1
Putative membrane protein.
       0.689
AQM60899.1
Hypothetical protein.
       0.665
spoIVA
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
  
   
 0.636
spoIIIAA
spore_III_AA: stage III sporulation protein AA; [S] COG3854 Uncharacterized protein conserved in bacteria.
  
  
 0.619
ylbJ
spore_ylbJ: sporulation integral membrane protein YlbJ; [S] COG3314 Uncharacterized protein conserved in bacteria.
 
  
 0.596
spoIIIAD
spore_III_AD: stage III sporulation protein AD.
  
   
 0.531
spoIIP
spore_II_P: stage II sporulation P family protein.
  
   
 0.525
tlp
SASP_tlp: small, acid-soluble spore protein tlp; Belongs to the Tlp family.
      
 0.519
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.