STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQM58682.1[S] COG3949 Uncharacterized membrane protein. (356 aa)    
Predicted Functional Partners:
ytxC
spo_ytxC: putative sporulation protein YtxC.
 
     0.717
spoIIIAE
spore_III_AE: stage III sporulation protein AE.
  
    0.679
AQM61481.1
Putative lipoprotein.
       0.673
spoVB
spore_V_B: stage V sporulation protein B; [R] COG2244 Membrane protein involved in the export of O-antigen and teichoic acid.
  
    0.627
yqfD
spore_yqfD: sporulation protein YqfD.
  
     0.612
comB
Putative 2-phosphosulfolactate phosphatase; [HR] COG2045 Phosphosulfolactate phosphohydrolase and related enzymes; Belongs to the ComB family.
 
     0.606
lonC
spore_lon_C: ATP-dependent protease, Lon family; [O] COG1067 Predicted ATP-dependent protease.
  
     0.597
spoIIM
spo_II_M: stage II sporulation protein M; [S] COG1300 Uncharacterized membrane protein.
  
    0.591
AQM60026.1
Radical SAM superfamily protein; [R] COG1242 Predicted Fe-S oxidoreductase.
       0.584
spoIIIAB
spore_III_AB: stage III sporulation protein AB.
  
    0.557
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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