STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQM60759.1Subtilase family protein; [O] COG1404 Subtilisin-like serine proteases; Belongs to the peptidase S8 family. (1191 aa)    
Predicted Functional Partners:
AQM58899.1
Stage II sporulation family protein; [M] COG3409 Putative peptidoglycan-binding domain-containing protein.
  
 0.936
AQM59446.1
Helix-turn-helix family protein; [K] COG1396 Predicted transcriptional regulators.
  
  
 0.680
AQM59949.1
Hypothetical protein.
       0.667
AQM58769.1
Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD family protein; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
     
 0.648
AQM58934.1
lysM domain protein; [M] COG1388 FOG: LysM repeat.
 
  
 0.605
yqfD
spore_yqfD: sporulation protein YqfD.
  
     0.605
NPD11_120
Small, acid-soluble spore s, alpha/beta type family protein.
  
     0.604
AQM58716.1
Hypothetical protein.
  
     0.590
AQM59762.1
Subtilase family protein; [O] COG1404 Subtilisin-like serine proteases.
 
 
 0.579
NPD11_109
[L] COG0629 Single-stranded DNA-binding protein.
  
     0.569
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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