STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQM59076.1HDOD domain protein; [T] COG2206 HD-GYP domain. (284 aa)    
Predicted Functional Partners:
AQM60856.1
GGDEF: diguanylate cyclase domain protein; [T] COG2199 FOG: GGDEF domain.
 
 0.923
AQM59725.1
GGDEF: diguanylate cyclase domain protein; [T] COG2199 FOG: GGDEF domain.
 
 
 0.876
AQM61144.1
[T] COG2200 FOG: EAL domain.
 
  
 0.829
AQM59676.1
GGDEF: diguanylate cyclase domain protein; [T] COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain.
  
 0.822
NPD11_399
GGDEF: diguanylate cyclase domain protein; [T] COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain.
 
  
 0.786
AQM61203.1
GGDEF: diguanylate cyclase domain protein; [T] COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain.
  
 0.785
NPD11_697
GGDEF: diguanylate cyclase domain protein; [T] COG2199 FOG: GGDEF domain.
  
 
 0.783
AQM60001.1
[T] COG2200 FOG: EAL domain.
 
  
 0.745
AQM60451.1
Glutamine synthetase, catalytic domain protein; [E] COG0174 Glutamine synthetase.
       0.551
AQM61419.1
cheR methyltransferase, SAM binding domain protein; [NT] COG1352 Methylase of chemotaxis methyl-accepting proteins.
 
   0.462
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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