STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
proVproV: glycine betaine/L-proline transport ATP binding subunit; [E] COG1125 ABC-type proline/glycine betaine transport systems, ATPase components. (378 aa)    
Predicted Functional Partners:
AQM61137.1
Binding--dependent transport system inner membrane component family protein; [M] COG1732 Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein).
 0.999
lpdA
lipoamide_DH: dihydrolipoyl dehydrogenase; [C] COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes.
 
   
 0.494
AQM61383.1
ABC transporter family protein; [CP] COG4555 ABC-type Na+ transport system, ATPase component.
 
    
0.455
AQM58843.1
ABC-2 type transporter family protein; [CP] COG1668 ABC-type Na+ efflux pump, permease component.
       0.438
NPD11_293
Miro-like family protein; [R] COG0488 ATPase components of ABC transporters with duplicated ATPase domains.
  
   
0.436
thrC
thrC: threonine synthase; [E] COG0498 Threonine synthase.
   
    0.435
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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