STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQM59100.1L,D-transpeptidase catalytic domain protein; [S] COG1376 Uncharacterized protein conserved in bacteria. (409 aa)    
Predicted Functional Partners:
AQM59300.1
HDIG: HDIG domain protein; [J] COG0617 tRNA nucleotidyltransferase/poly(A) polymerase.
       0.621
AQM60821.1
Hypothetical protein.
       0.580
NPD11_548
Iron Transport-associated domain protein.
  
     0.430
lacA-3
[R] COG0110 Acetyltransferase (isoleucine patch superfamily).
      
 0.429
yidC
yidC_oxa1_cterm: membrane insertase, YidC/Oxa1 family domain protein; [U] COG0706 Preprotein translocase subunit YidC.
      
 0.422
AQM58978.1
yvrJ family protein.
  
     0.403
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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