STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
addBHelicase-exonuclease AddAB, AddB subunit; ATP-dependent DNA helicase; Belongs to the helicase family. AddB/RexB type 1 subfamily. (1149 aa)    
Predicted Functional Partners:
addA
Helicase-exonuclease AddAB, AddA subunit; ATP-dependent DNA helicase.
 
 
 0.999
sbcD
Exonuclease SbcCD, D subunit; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
 
  
 0.608
AQM59931.1
AAA domain protein; [L] COG0419 ATPase involved in DNA repair.
 
  
 0.513
AQM59692.1
gtrA-like family protein; [S] COG2246 Predicted membrane protein.
       0.498
AQM59719.1
Conserved hypothetical protein; [R] COG2384 Predicted SAM-dependent methyltransferase.
 
     0.475
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
 
   
 0.474
AQM60524.1
HDIG: HDIG domain protein; [R] COG3481 Predicted HD-superfamily hydrolase.
 
     0.425
AQM60750.1
[S] COG2357 Uncharacterized protein conserved in bacteria; region found in RelA / SpoT s family protein.
  
     0.408
recJ
recJ: single-stranded-DNA-specific exonuclease RecJ; [L] COG0608 Single-stranded DNA-specific exonuclease.
     
 0.402
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.