Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AQM60159.1 | AQM61345.1 | NPD11_1911 | NPD11_1913 | Putative membrane protein insertion efficiency factor; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | R3H domain protein; [R] COG1847 Predicted RNA-binding protein. | 0.854 |
| AQM60159.1 | gidA | NPD11_1911 | NPD11_1915 | Putative membrane protein insertion efficiency factor; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family. | 0.574 |
| AQM60159.1 | rnpA | NPD11_1911 | NPD11_1910 | Putative membrane protein insertion efficiency factor; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.973 |
| AQM60159.1 | rpmH | NPD11_1911 | NPD11_1909 | Putative membrane protein insertion efficiency factor; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | rpmH_bact: ribosomal protein L34; [J] COG0230 Ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family. | 0.789 |
| AQM60159.1 | rsmD | NPD11_1911 | NPD11_196 | Putative membrane protein insertion efficiency factor; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD; [L] COG0742 N6-adenine-specific methylase. | 0.738 |
| AQM60159.1 | rsmG | NPD11_1911 | NPD11_1916 | Putative membrane protein insertion efficiency factor; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family. | 0.573 |
| AQM60159.1 | secE | NPD11_1911 | NPD11_1661 | Putative membrane protein insertion efficiency factor; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | Preprotein translocase, SecE subunit; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation. | 0.694 |
| AQM60159.1 | serS | NPD11_1911 | NPD11_1892 | Putative membrane protein insertion efficiency factor; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | serine--tRNA ligase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec). | 0.679 |
| AQM60159.1 | trmE | NPD11_1911 | NPD11_1914 | Putative membrane protein insertion efficiency factor; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | tRNA modification GTPase TrmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family. | 0.585 |
| AQM60159.1 | yidC | NPD11_1911 | NPD11_1912 | Putative membrane protein insertion efficiency factor; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | yidC_oxa1_cterm: membrane insertase, YidC/Oxa1 family domain protein; [U] COG0706 Preprotein translocase subunit YidC. | 0.933 |
| AQM61345.1 | AQM60159.1 | NPD11_1913 | NPD11_1911 | R3H domain protein; [R] COG1847 Predicted RNA-binding protein. | Putative membrane protein insertion efficiency factor; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | 0.854 |
| AQM61345.1 | gidA | NPD11_1913 | NPD11_1915 | R3H domain protein; [R] COG1847 Predicted RNA-binding protein. | tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family. | 0.648 |
| AQM61345.1 | rnpA | NPD11_1913 | NPD11_1910 | R3H domain protein; [R] COG1847 Predicted RNA-binding protein. | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.891 |
| AQM61345.1 | rpmH | NPD11_1913 | NPD11_1909 | R3H domain protein; [R] COG1847 Predicted RNA-binding protein. | rpmH_bact: ribosomal protein L34; [J] COG0230 Ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family. | 0.682 |
| AQM61345.1 | rsmG | NPD11_1913 | NPD11_1916 | R3H domain protein; [R] COG1847 Predicted RNA-binding protein. | 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family. | 0.826 |
| AQM61345.1 | trmE | NPD11_1913 | NPD11_1914 | R3H domain protein; [R] COG1847 Predicted RNA-binding protein. | tRNA modification GTPase TrmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family. | 0.679 |
| AQM61345.1 | yidC | NPD11_1913 | NPD11_1912 | R3H domain protein; [R] COG1847 Predicted RNA-binding protein. | yidC_oxa1_cterm: membrane insertase, YidC/Oxa1 family domain protein; [U] COG0706 Preprotein translocase subunit YidC. | 0.925 |
| gidA | AQM60159.1 | NPD11_1915 | NPD11_1911 | tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family. | Putative membrane protein insertion efficiency factor; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | 0.574 |
| gidA | AQM61345.1 | NPD11_1915 | NPD11_1913 | tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family. | R3H domain protein; [R] COG1847 Predicted RNA-binding protein. | 0.648 |
| gidA | rnpA | NPD11_1915 | NPD11_1910 | tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family. | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.793 |
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