STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQM61073.1Hypothetical protein. (166 aa)    
Predicted Functional Partners:
AQM58757.1
Glycosyl hydrolases 18 family protein; [G] COG3325 Chitinase.
    
 
 0.799
AQM61083.1
Glycosyl hydrolases 18 family protein; [G] COG3325 Chitinase.
    
 
 0.799
AQM59350.1
Glycosyl hydrolases 18 family protein; [G] COG3325 Chitinase.
    
 
 0.799
AQM60877.1
4Fe-4S iron sulfur cluster binding s, NifH/frxC family protein; [D] COG1192 ATPases involved in chromosome partitioning.
  
  
 0.780
spo0J
parB_part: ParB/RepB/Spo0J family partition domain protein; [K] COG1475 Predicted transcriptional regulators; Belongs to the ParB family.
  
 
 0.780
scpA
scpA/B family protein; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.
  
 
 0.686
noc
parB_part: ParB/RepB/Spo0J family partition domain protein; [K] COG1475 Predicted transcriptional regulators; Belongs to the ParB family.
  
 
 0.638
rsmG
16S rRNA (guanine(527)-N(7))-methyltransferase RsmG; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family.
     
 0.512
gidA
tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family.
  
    0.501
lonC
spore_lon_C: ATP-dependent protease, Lon family; [O] COG1067 Predicted ATP-dependent protease.
  
     0.485
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.