STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQM61049.1mazG-like family protein. (106 aa)    
Predicted Functional Partners:
AQM60557.1
DHHA1 domain protein; Has phosphodiesterase (PDE) activity against cyclic-di-AMP (c-di-AMP); Belongs to the GdpP/PdeA phosphodiesterase family.
       0.791
rplI
Ribosomal protein L9; Binds to the 23S rRNA.
       0.791
lonC
spore_lon_C: ATP-dependent protease, Lon family; [O] COG1067 Predicted ATP-dependent protease.
       0.775
AQM59053.1
Hypothetical protein.
  
     0.768
AQM59341.1
Hypothetical protein.
 
     0.765
AQM61406.1
37-kD nucleoid-associated bacterial family protein.
  
     0.732
ytxC
spo_ytxC: putative sporulation protein YtxC.
  
     0.723
AQM58729.1
Hypothetical protein.
  
     0.718
mreD
shape_MreD: rod shape-determining protein MreD.
  
     0.680
AQM58779.1
Septum formation initiator family protein.
  
     0.677
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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