STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NPD11_194yloV: DAK2 domain fusion YloV family protein; [R] COG1461 Predicted kinase related to dihydroxyacetone kinase. (548 aa)    
Predicted Functional Partners:
NPD11_705
degV: EDD, DegV family domain protein; [S] COG1307 Uncharacterized protein conserved in bacteria.
 
 0.983
NPD11_193
Asp23 family protein; [S] COG1302 Uncharacterized protein conserved in bacteria.
 
  
 0.982
AQM60020.1
degV: EDD, DegV family domain protein; [S] COG1307 Uncharacterized protein conserved in bacteria.
 
 0.979
AQM60518.1
degV: EDD, DegV family domain protein; [S] COG1307 Uncharacterized protein conserved in bacteria.
 
 0.976
AQM61099.1
degV: EDD, DegV family domain protein; [S] COG1307 Uncharacterized protein conserved in bacteria.
 
 0.961
AQM58828.1
degV: EDD, DegV family domain protein; [S] COG1307 Uncharacterized protein conserved in bacteria.
 
 0.910
recG
ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily.
  
    0.742
coaD
Pantetheine-phosphate adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.
 
     0.654
rpmB
L28: ribosomal protein L28; [J] COG0227 Ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
     
 0.646
NPD11_199
Putative archaeal/vacuolar-type H+-ATPase subunit H; [D] COG3599 Cell division initiation protein.
 
     0.645
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.