STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQM60186.1dnaD_dom: DnaD domain protein; [L] COG3935 Putative primosome component and related proteins. (330 aa)    
Predicted Functional Partners:
AQM58700.1
istB-like ATP binding family protein; [L] COG1484 DNA replication protein.
 
  
 0.968
NPD11_107
Hypothetical protein.
  
     0.765
secG
Preprotein translocase, SecG subunit; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.
  
     0.739
AQM58775.1
Helix-turn-helix family protein; [R] COG0457 FOG: TPR repeat.
 
   
 0.703
AQM59053.1
Hypothetical protein.
  
     0.702
AQM60070.1
Tetratricopeptide repeat family protein; [K] COG1396 Predicted transcriptional regulators.
 
   
 0.701
NPD11_146
Tetratricopeptide repeat family protein; [R] COG0457 FOG: TPR repeat.
  
     0.701
AQM59495.1
CYTH domain protein; [F] COG1437 Adenylate cyclase, class 2 (thermophilic).
  
     0.697
NPD11_109
[L] COG0629 Single-stranded DNA-binding protein.
 
     0.685
NPD11_940
Hypothetical protein; nfeD-like C-terminal, partner-binding family protein; [OU] COG1585 Membrane protein implicated in regulation of membrane protease activity.
  
     0.670
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.