STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQM58833.1Peptidase M23 family protein; [M] COG0739 Membrane proteins related to metalloendopeptidases. (396 aa)    
Predicted Functional Partners:
AQM60850.1
Transglycosylase family protein; [M] COG0744 Membrane carboxypeptidase (penicillin-binding protein).
  
  
 0.693
AQM60439.1
[M] COG0744 Membrane carboxypeptidase (penicillin-binding protein).
 
   
 0.673
AQM58700.1
istB-like ATP binding family protein; [L] COG1484 DNA replication protein.
       0.652
AQM60186.1
dnaD_dom: DnaD domain protein; [L] COG3935 Putative primosome component and related proteins.
       0.652
AQM60430.1
3D domain protein; [S] COG3583 Uncharacterized protein conserved in bacteria.
 
  
 0.491
AQM60204.1
Peptidase M23 family protein; [M] COG0739 Membrane proteins related to metalloendopeptidases.
  
    0.433
ftsZ
Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.
 
   
 0.414
spoIID
spore_II_D: stage II sporulation protein D; [D] COG2385 Sporulation protein and related proteins.
 
   
 0.403
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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