STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQM60539.1dUTPase family protein; [S] COG4508 Uncharacterized protein conserved in bacteria. (153 aa)    
Predicted Functional Partners:
AQM61271.1
Conserved hypothetical protein; [S] COG3238 Uncharacterized protein conserved in bacteria.
       0.685
AQM59762.1
Subtilase family protein; [O] COG1404 Subtilisin-like serine proteases.
 
     0.655
AQM59878.1
Beta-lactamase superfamily domain protein; [R] COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold.
       0.655
NPD11_258
Hypothetical protein.
  
     0.652
AQM60070.1
Tetratricopeptide repeat family protein; [K] COG1396 Predicted transcriptional regulators.
  
    0.644
AQM61368.1
Ribosomal RNA adenine dimethylase family protein.
  
     0.640
AQM58684.1
Dolichyl-phosphate-mannose-mannosyltransferase family protein.
  
     0.585
AQM58971.1
Hypothetical protein.
       0.574
AQM60048.1
Conserved hypothetical protein; [J] COG2868 Predicted ribosomal protein.
 
     0.565
thyA
Thymidylate synthase; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by- product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis.
    
 0.533
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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