Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AQM60211.1Hypothetical protein. (53 aa)    
Predicted Functional Partners:
AQM58971.1
Hypothetical protein.
       0.625
AQM61021.1
spore_ger_x_C: germination, Ger(x)C family protein.
  
     0.606
murA-2
UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
       0.571
AQM59003.1
[R] COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I.
       0.519
AQM60539.1
dUTPase family protein; [S] COG4508 Uncharacterized protein conserved in bacteria.
       0.475
AQM58972.1
Hypothetical protein.
  
     0.470
NPD11_3
Small, acid-soluble spore s, alpha/beta type family protein.
   
    0.420
ytxC
spo_ytxC: putative sporulation protein YtxC.
   
    0.412
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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