STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQM58643.1lytTr DNA-binding domain protein; [KT] COG3279 Response regulator of the LytR/AlgR family. (221 aa)    
Predicted Functional Partners:
AQM60725.1
Hypothetical protein.
       0.805
AQM60825.1
GHKL domain protein; [T] COG2972 Predicted signal transduction protein with a C-terminal ATPase domain.
 
  
 0.697
NPD11_631
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein; [T] COG2972 Predicted signal transduction protein with a C-terminal ATPase domain.
 
  
 0.662
AQM59688.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein; [T] COG2972 Predicted signal transduction protein with a C-terminal ATPase domain.
 
  
 0.656
AQM60442.1
[KT] COG3279 Response regulator of the LytR/AlgR family.
  
     0.503
NPD11_632
[KT] COG3279 Response regulator of the LytR/AlgR family.
  
     0.496
AQM59463.1
Multicopper oxidase family protein.
       0.444
AQM58829.1
HAMP domain protein; [T] COG2972 Predicted signal transduction protein with a C-terminal ATPase domain.
 
  
 0.419
AQM59015.1
Histidine kinase family protein; [T] COG2972 Predicted signal transduction protein with a C-terminal ATPase domain.
 
  
 0.419
NPD11_820
Hypothetical protein; [T] COG2972 Predicted signal transduction protein with a C-terminal ATPase domain.
  
  
 0.404
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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