STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQM60728.1gtrA-like family protein; [S] COG2246 Predicted membrane protein. (137 aa)    
Predicted Functional Partners:
AQM61372.1
phosphoribosyl-AMP cyclohydrolase family protein; Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP; Belongs to the PRA-CH family.
  
  
 0.842
AQM59870.1
Glycosyl transferase 2 family protein; [M] COG0463 Glycosyltransferases involved in cell wall biogenesis.
 
  
 0.799
AQM61443.1
Putative membrane protein.
       0.716
NPD11_813
Hypothetical protein.
 
     0.667
AQM60168.1
Glycosyl hydrolases 25 family protein; [M] COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase).
  
     0.659
AQM61046.1
Signal peptidase (SPase) II family protein.
  
   
 0.649
AQM61335.1
Hypothetical protein.
  
     0.628
NPD11_548
Iron Transport-associated domain protein.
  
     0.622
AQM61368.1
Ribosomal RNA adenine dimethylase family protein.
 
     0.617
hisF
Imidazoleglycerol phosphate synthase, cyclase subunit; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit.
  
  
 0.591
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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