STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ypdEPeptidase M20/M25/M40 family protein; [G] COG1363 Cellulase M and related proteins. (350 aa)    
Predicted Functional Partners:
AQM60482.1
PTS system, Lactose/Cellobiose specific IIA subunit; [G] COG1447 Phosphotransferase system cellobiose-specific component IIA.
       0.800
AQM60108.1
Hypothetical protein; Bacterial purine repressor, N-terminal family protein; [K] COG3711 Transcriptional antiterminator.
  
    0.786
AQM58670.1
PTS system, Lactose/Cellobiose specific IIB subunit; [G] COG1440 Phosphotransferase system cellobiose-specific component IIB.
       0.760
AQM59044.1
PTS system, lactose/cellobiose IIC component family protein; The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane.
       0.676
AQM60102.1
Hypothetical protein; creatinase/Prolidase N-terminal domain protein; [E] COG0006 Xaa-Pro aminopeptidase.
 
  
 0.615
AQM59410.1
Peptidase M20/M25/M40 family protein; [G] COG1363 Cellulase M and related proteins.
  
  
 0.547
AQM60497.1
D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain protein; [HE] COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
 
    0.493
AQM59539.1
C_S_lyase_PatB: C-S lyase family protein; [E] COG1168 Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities.
       0.471
AQM59708.1
Hypothetical protein.
  
    0.452
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.