STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQM59736.1Iron-containing alcohol dehydrogenase family protein; [C] COG1454 Alcohol dehydrogenase, class IV. (381 aa)    
Predicted Functional Partners:
AQM60433.1
[C] COG1012 NAD-dependent aldehyde dehydrogenases.
 
 0.973
AQM60016.1
eutH_ACDH: acetaldehyde dehydrogenase; [C] COG1012 NAD-dependent aldehyde dehydrogenases.
 
 0.973
dhaT
[C] COG1454 Alcohol dehydrogenase, class IV.
  
  
 
0.920
nifJ
Pyruvate:ferredoxin (flavodoxin) oxidoreductase; pyruv_ox_red: pyruvate:ferredoxin (flavodoxin) oxidoreductase; [C] COG1014 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit.
  
  
 0.701
AQM61352.1
merR regulatory family protein; [K] COG0789 Predicted transcriptional regulators.
       0.470
glgA
Glycogen/starch synthase, ADP-glucose type family protein; Synthesizes alpha-1,4-glucan chains using ADP-glucose.
   
    0.436
glgA-2
Glycogen/starch synthase, ADP-glucose type family protein; Synthesizes alpha-1,4-glucan chains using ADP-glucose.
   
    0.436
AQM61171.1
Putative membrane protein.
       0.429
cutD
Choline TMA-lyase-activating enzyme; Catalyzes activation of the choline trimethylamine-lyase CutC under anaerobic conditions by generation of an organic free radical on a glycine residue, via an homolytic cleavage of S-adenosyl-L-methionine (SAM).
  
  
 0.426
NPD11_745
Glycosyl hydrolase 85 family protein; [G] COG4724 Endo-beta-N-acetylglucosaminidase D.
   
    0.400
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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