STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cutCCholine trimethylamine-lyase; Glycine radical enzyme that catalyzes the cleavage of a C-N bond in choline, producing trimethylamine (TMA) and acetaldehyde. Belongs to the glycyl radical enzyme (GRE) family. CutC subfamily. (848 aa)    
Predicted Functional Partners:
cutD
Choline TMA-lyase-activating enzyme; Catalyzes activation of the choline trimethylamine-lyase CutC under anaerobic conditions by generation of an organic free radical on a glycine residue, via an homolytic cleavage of S-adenosyl-L-methionine (SAM).
 
  
 0.969
AQM61487.1
BMC domain protein.
 
     0.895
AQM60998.1
Hypothetical protein.
 
     0.892
AQM60644.1
Multidrug resistance efflux transporter family protein; [GER] COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily.
 
     0.887
AQM60433.1
[C] COG1012 NAD-dependent aldehyde dehydrogenases.
 
  
 0.878
eutJ
eutJ: ethanolamine utilization EutJ family protein; [E] COG4820 Ethanolamine utilization protein, possible chaperonin.
 
   
 0.853
AQM58750.1
[E] COG4917 Ethanolamine utilization protein; Belongs to the EutP/PduV family.
 
   
 0.823
pflA
Pyruvate formate-lyase 1-activating enzyme; Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine; Belongs to the organic radical-activating enzymes family.
 
  
 0.810
AQM59087.1
Ethanolamine utilization EutN/carboxysome family protein; [QC] COG4576 Carbon dioxide concentrating mechanism/carboxysome shell protein.
 
   
 0.789
AQM61501.1
BMC domain protein; [QC] COG4577 Carbon dioxide concentrating mechanism/carboxysome shell protein.
 
   
 0.788
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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