STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQM59096.1Hypothetical protein. (204 aa)    
Predicted Functional Partners:
AQM59087.1
Ethanolamine utilization EutN/carboxysome family protein; [QC] COG4576 Carbon dioxide concentrating mechanism/carboxysome shell protein.
  
  
 0.885
eutJ
eutJ: ethanolamine utilization EutJ family protein; [E] COG4820 Ethanolamine utilization protein, possible chaperonin.
  
  
 0.877
AQM58750.1
[E] COG4917 Ethanolamine utilization protein; Belongs to the EutP/PduV family.
  
  
 0.847
pduU
BMC domain protein; [E] COG4810 Ethanolamine utilization protein.
     
 0.824
cutD
Choline TMA-lyase-activating enzyme; Catalyzes activation of the choline trimethylamine-lyase CutC under anaerobic conditions by generation of an organic free radical on a glycine residue, via an homolytic cleavage of S-adenosyl-L-methionine (SAM).
       0.811
AQM61487.1
BMC domain protein.
       0.808
AQM59099.1
[E] COG4766 Ethanolamine utilization protein.
  
  
 0.798
AQM61428.1
BMC domain protein; [QC] COG4577 Carbon dioxide concentrating mechanism/carboxysome shell protein.
  
  
 0.648
AQM60433.1
[C] COG1012 NAD-dependent aldehyde dehydrogenases.
  
  
 0.619
cutC
Choline trimethylamine-lyase; Glycine radical enzyme that catalyzes the cleavage of a C-N bond in choline, producing trimethylamine (TMA) and acetaldehyde. Belongs to the glycyl radical enzyme (GRE) family. CutC subfamily.
       0.617
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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