STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQM60609.1nlpC/P60 family protein; [M] COG0791 Cell wall-associated hydrolases (invasion-associated proteins). (433 aa)    
Predicted Functional Partners:
AQM60430.1
3D domain protein; [S] COG3583 Uncharacterized protein conserved in bacteria.
 
  
 0.827
ftsE
Cell division ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division.
 
  
 0.747
AQM59066.1
ftsX-like permease family protein; Part of the ABC transporter FtsEX involved in asymmetric cellular division facilitating the initiation of sporulation. Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.
 
  
 0.724
rsmI
16S rRNA (cytidine(1402)-2'-O)-methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
  
    0.666
AQM58746.1
Met-10+ like-family protein; [R] COG4123 Predicted O-methyltransferase.
       0.659
AQM59252.1
[N] COG5492 Bacterial surface proteins containing Ig-like domains.
 
  
 0.615
AQM60150.1
N-acetylmuramoyl-L-alanine amidase family protein.
  
  
 0.611
AQM59971.1
Cell cycle family protein; [D] COG0772 Bacterial cell division membrane protein; Belongs to the SEDS family.
  
  
 0.607
AQM60298.1
PPIC-type PPIASE domain protein; [M] COG0860 N-acetylmuramoyl-L-alanine amidase.
  
 0.602
NPD11_30
[T] COG3103 SH3 domain protein.
 
  
0.595
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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