STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQM58746.1Met-10+ like-family protein; [R] COG4123 Predicted O-methyltransferase. (256 aa)    
Predicted Functional Partners:
rsmI
16S rRNA (cytidine(1402)-2'-O)-methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
 
  
 0.930
tmcAL
HIGH Nucleotidyl Transferase family protein; Catalyzes the formation of N(4)-acetylcytidine (ac(4)C) at the wobble position of elongator tRNA(Met), using acetate and ATP as substrates. First activates an acetate ion to form acetyladenylate (Ac- AMP) and then transfers the acetyl group to tRNA to form ac(4)C34.
 
     0.751
AQM60609.1
nlpC/P60 family protein; [M] COG0791 Cell wall-associated hydrolases (invasion-associated proteins).
       0.659
AQM61359.1
GIY-YIG catalytic domain protein; [L] COG2827 Predicted endonuclease containing a URI domain.
  
  
 0.550
AQM60557.1
DHHA1 domain protein; Has phosphodiesterase (PDE) activity against cyclic-di-AMP (c-di-AMP); Belongs to the GdpP/PdeA phosphodiesterase family.
  
     0.550
AQM60476.1
Hypothetical protein; PSP1 C-terminal conserved region family protein; [S] COG1774 Uncharacterized homolog of PSP1.
 
    0.481
metG
methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
 
    0.462
NPD11_208
Radical SAM superfamily protein; [KB] COG1243 Histone acetyltransferase.
  
     0.461
AQM59238.1
[R] COG0457 FOG: TPR repeat.
  
    0.431
NPD11_798
DEAD/DEAH box helicase family protein; [KL] COG1061 DNA or RNA helicases of superfamily II.
       0.426
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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