Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AQM58724.1 | AQM59971.1 | NPD11_2221 | NPD11_2220 | [M] COG0768 Cell division protein FtsI/penicillin-binding protein 2. | Cell cycle family protein; [D] COG0772 Bacterial cell division membrane protein; Belongs to the SEDS family. | 0.997 |
| AQM58724.1 | AQM60496.1 | NPD11_2221 | NPD11_2219 | [M] COG0768 Cell division protein FtsI/penicillin-binding protein 2. | [T] COG1716 FOG: FHA domain. | 0.936 |
| AQM58724.1 | uvrA | NPD11_2221 | NPD11_2218 | [M] COG0768 Cell division protein FtsI/penicillin-binding protein 2. | Excinuclease ABC subunit A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. | 0.624 |
| AQM58724.1 | uvrC | NPD11_2221 | NPD11_2222 | [M] COG0768 Cell division protein FtsI/penicillin-binding protein 2. | Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | 0.647 |
| AQM59971.1 | AQM58724.1 | NPD11_2220 | NPD11_2221 | Cell cycle family protein; [D] COG0772 Bacterial cell division membrane protein; Belongs to the SEDS family. | [M] COG0768 Cell division protein FtsI/penicillin-binding protein 2. | 0.997 |
| AQM59971.1 | AQM60496.1 | NPD11_2220 | NPD11_2219 | Cell cycle family protein; [D] COG0772 Bacterial cell division membrane protein; Belongs to the SEDS family. | [T] COG1716 FOG: FHA domain. | 0.915 |
| AQM59971.1 | polA | NPD11_2220 | NPD11_1018 | Cell cycle family protein; [D] COG0772 Bacterial cell division membrane protein; Belongs to the SEDS family. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.504 |
| AQM59971.1 | uvrA | NPD11_2220 | NPD11_2218 | Cell cycle family protein; [D] COG0772 Bacterial cell division membrane protein; Belongs to the SEDS family. | Excinuclease ABC subunit A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. | 0.619 |
| AQM59971.1 | uvrC | NPD11_2220 | NPD11_2222 | Cell cycle family protein; [D] COG0772 Bacterial cell division membrane protein; Belongs to the SEDS family. | Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | 0.671 |
| AQM60496.1 | AQM58724.1 | NPD11_2219 | NPD11_2221 | [T] COG1716 FOG: FHA domain. | [M] COG0768 Cell division protein FtsI/penicillin-binding protein 2. | 0.936 |
| AQM60496.1 | AQM59971.1 | NPD11_2219 | NPD11_2220 | [T] COG1716 FOG: FHA domain. | Cell cycle family protein; [D] COG0772 Bacterial cell division membrane protein; Belongs to the SEDS family. | 0.915 |
| AQM60496.1 | uvrA | NPD11_2219 | NPD11_2218 | [T] COG1716 FOG: FHA domain. | Excinuclease ABC subunit A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. | 0.632 |
| AQM60496.1 | uvrC | NPD11_2219 | NPD11_2222 | [T] COG1716 FOG: FHA domain. | Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | 0.594 |
| mfd | mutL | NPD11_1736 | NPD11_304 | Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. | DNA mismatch repair MutL family protein; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.562 |
| mfd | polA | NPD11_1736 | NPD11_1018 | Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.825 |
| mfd | recR | NPD11_1736 | NPD11_2055 | Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. | Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. | 0.527 |
| mfd | uvrA | NPD11_1736 | NPD11_2218 | Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. | Excinuclease ABC subunit A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. | 0.958 |
| mfd | uvrC | NPD11_1736 | NPD11_2222 | Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. | Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | 0.579 |
| mutL | mfd | NPD11_304 | NPD11_1736 | DNA mismatch repair MutL family protein; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. | 0.562 |
| mutL | pcrA | NPD11_304 | NPD11_1489 | DNA mismatch repair MutL family protein; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | pcrA: ATP-dependent DNA helicase PcrA; [L] COG0210 Superfamily I DNA and RNA helicases. | 0.633 |
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