STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQM60478.1Hypothetical protein; Glycosyl hydrolase family 65, N-terminal domain protein. (769 aa)    
Predicted Functional Partners:
AQM60758.1
LPXTG_anchor: LPXTG cell wall anchor domain protein; [G] COG3250 Beta-galactosidase/beta-glucuronidase; Belongs to the glycosyl hydrolase 2 family.
  
   
 0.715
AQM60957.1
Hypothetical protein.
  
   0.697
AQM58820.1
[G] COG3345 Alpha-galactosidase.
 
   
 0.660
NPD11_964
endonuclease/Exonuclease/phosphatase family protein; [R] COG3568 Metal-dependent hydrolase.
  
   
 0.572
AQM60230.1
Hypothetical protein.
  
     0.556
AQM59229.1
Glycosyl hydrolases 18 family protein; [G] COG3325 Chitinase; Belongs to the glycosyl hydrolase 18 family.
  
   
 0.514
NPD11_251
ftsK/SpoIIIE family protein; [D] COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins.
   
 
 0.484
NPD11_525
Glycosyl Hydrolase Family 88 family protein.
 
   
 0.474
AQM59237.1
PTS system mannose/fructose/sorbose IID component family protein; [G] COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID.
  
    0.458
lacA
lacA: galactose-6-phosphate isomerase, LacA subunit; [G] COG0698 Ribose 5-phosphate isomerase RpiB.
       0.446
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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