STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQM58820.1[G] COG3345 Alpha-galactosidase. (740 aa)    
Predicted Functional Partners:
galK
Galactokinase; Catalyzes the transfer of the gamma-phosphate of ATP to D- galactose to form alpha-D-galactose-1-phosphate (Gal-1-P). Belongs to the GHMP kinase family. GalK subfamily.
 
  
 0.774
galT
galT_2: galactose-1-phosphate uridylyltransferase; [G] COG4468 Galactose-1-phosphate uridyltransferase.
 
  
 0.742
AQM60478.1
Hypothetical protein; Glycosyl hydrolase family 65, N-terminal domain protein.
 
   
 0.660
lacA
lacA: galactose-6-phosphate isomerase, LacA subunit; [G] COG0698 Ribose 5-phosphate isomerase RpiB.
       0.592
lacB
lacB: galactose-6-phosphate isomerase, LacB subunit; [G] COG0698 Ribose 5-phosphate isomerase RpiB.
       0.511
AQM59792.1
Binding--dependent transport system inner membrane component family protein; [G] COG0395 ABC-type sugar transport system, permease component.
 
  
 0.461
AQM60006.1
Alpha amylase, catalytic domain protein; [G] COG0366 Glycosidases.
 
  
 0.422
NPD11_677
Sucrose-6-phosphate hydrolase family protein; Enables the bacterium to metabolize sucrose as a sole carbon source; Belongs to the glycosyl hydrolase 32 family.
 
   
 0.411
AQM60602.1
Hypothetical protein; Glycosyl hydrolase family 98 C-terminal domain protein.
     
 0.404
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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