STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lacAlacA: galactose-6-phosphate isomerase, LacA subunit; [G] COG0698 Ribose 5-phosphate isomerase RpiB. (142 aa)    
Predicted Functional Partners:
lacB-2
Galactose-6-phosphate isomerase, LacB subunit; [G] COG0698 Ribose 5-phosphate isomerase RpiB.
 
    0.930
lacB
lacB: galactose-6-phosphate isomerase, LacB subunit; [G] COG0698 Ribose 5-phosphate isomerase RpiB.
 
   
0.923
pfkB-2
pfkB: 1-phosphofructokinase; [G] COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB); Belongs to the carbohydrate kinase PfkB family. LacC subfamily.
  
  
 0.688
spoIIIAB
spore_III_AB: stage III sporulation protein AB.
   
    0.645
AQM58820.1
[G] COG3345 Alpha-galactosidase.
       0.592
lacE
lac_pts_IIC: PTS system, lactose-specific IIC component; [G] COG1455 Phosphotransferase system cellobiose-specific component IIC.
 
  
 0.576
pfkB
pfkB: 1-phosphofructokinase; [G] COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB); Belongs to the carbohydrate kinase PfkB family. LacC subfamily.
  
  
 0.533
AQM60602.1
Hypothetical protein; Glycosyl hydrolase family 98 C-terminal domain protein.
       0.505
nifJ
Pyruvate:ferredoxin (flavodoxin) oxidoreductase; pyruv_ox_red: pyruvate:ferredoxin (flavodoxin) oxidoreductase; [C] COG1014 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit.
     
 0.460
AQM60478.1
Hypothetical protein; Glycosyl hydrolase family 65, N-terminal domain protein.
       0.446
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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