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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
srtBsortase_srtB: sortase, SrtB family; [S] COG4509 Uncharacterized protein conserved in bacteria. (232 aa)    
Predicted Functional Partners:
AQM59121.1
Hypothetical protein.
       0.773
cinA
pncC_: amidohydrolase, PncC family domain protein; [R] COG1058 Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA; Belongs to the CinA family.
      0.680
AQM60001.1
[T] COG2200 FOG: EAL domain.
       0.631
AQM60733.1
Conserved hypothetical protein; [R] COG0628 Predicted permease.
  
     0.509
AQM61076.1
Von Willebrand factor type A domain protein.
   
   0.469
NPD11_407
Glycosyl hydrolases 25 family protein; [M] COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase).
  
     0.441
AQM60431.1
choice_anch_A: choice-of-anchor A domain protein; [M] COG4932 Predicted outer membrane protein.
 
 
   0.439
AQM59432.1
F5/8 type C domain protein.
  
     0.428
AQM59648.1
Sortase_fam: sortase family protein; [M] COG3764 Sortase (surface protein transpeptidase).
 
   
 0.405
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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