Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AQM59372.1Hypothetical protein. (210 aa)    
Predicted Functional Partners:
AQM59922.1
Hypothetical protein.
       0.780
AQM61076.1
Von Willebrand factor type A domain protein.
  
  
 0.760
AQM61127.1
exp_by_SipW_IV: alternate signal-mediated exported, CPF_0494 family protein.
       0.674
NPD11_758
ABC transporter family protein; [V] COG1132 ABC-type multidrug transport system, ATPase and permease components.
  
  
 0.522
AQM60480.1
Hypothetical protein.
       0.485
AQM60496.1
[T] COG1716 FOG: FHA domain.
  
  
 0.456
AQM59962.1
[KT] COG3279 Response regulator of the LytR/AlgR family.
  
  
 0.425
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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