STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQM60338.1Acetyltransferase domain protein; [R] COG3153 Predicted acetyltransferase. (172 aa)    
Predicted Functional Partners:
AQM59183.1
Hypothetical protein.
       0.773
NPD11_143
Hypothetical protein.
 
      0.670
AQM60572.1
matE: MATE efflux family protein; [V] COG0534 Na+-driven multidrug efflux pump.
  
    0.548
AQM60713.1
Zinc-ribbon domain protein.
       0.532
AQM60453.1
ABC transporter family protein; [PH] COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components.
       0.473
AQM61236.1
fecCD transport family protein; [P] COG0609 ABC-type Fe3+-siderophore transport system, permease component; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
       0.444
AQM59923.1
fecCD transport family protein; [P] COG0609 ABC-type Fe3+-siderophore transport system, permease component; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
       0.444
NPD11_693
grpB family protein; [S] COG2320 Uncharacterized conserved protein.
 
     0.434
AQM60234.1
grpB family protein; [S] COG2320 Uncharacterized conserved protein.
 
     0.417
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.