STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yjeM-2Amino acid permease family protein; [E] COG0531 Amino acid transporters. (510 aa)    
Predicted Functional Partners:
AQM60006.1
Alpha amylase, catalytic domain protein; [G] COG0366 Glycosidases.
   
 0.557
aaxC
Arginine/agmatine antiporter; [E] COG0531 Amino acid transporters.
  
     0.555
AQM60579.1
[G] COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases; Belongs to the glycosyl hydrolase 31 family.
  
   0.482
AQM59252.1
[N] COG5492 Bacterial surface proteins containing Ig-like domains.
  
    0.480
NPD11_84
Amino acid permease family protein; [E] COG0531 Amino acid transporters.
  
     0.401
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.