STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQM60876.1F5/8 type C domain protein. (807 aa)    
Predicted Functional Partners:
AQM60214.1
Glycosyl hydrolase family 20, catalytic domain protein; [G] COG3525 N-acetyl-beta-hexosaminidase.
 
     0.903
AQM60737.1
Bacterial extracellular solute-binding family protein; [G] COG1653 ABC-type sugar transport system, periplasmic component.
 
     0.610
AQM59791.1
Hypothetical protein; Glycosyl hydrolases family 38 C-terminal domain protein; [G] COG0383 Alpha-mannosidase.
 
     0.605
AQM61393.1
Hypothetical protein.
 
     0.601
AQM60592.1
Hypothetical protein.
  
     0.561
AQM59432.1
F5/8 type C domain protein.
  
     0.520
AQM59383.1
Dolichyl-phosphate-mannose-mannosyltransferase family protein.
  
     0.519
AQM58922.1
Helix-turn-helix domain protein; [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain.
 
     0.513
AQM61520.1
Fibronectin type III domain protein.
  
     0.512
AQM60471.1
Acetyltransferase family protein; [KR] COG0454 Histone acetyltransferase HPA2 and related acetyltransferases.
  
     0.509
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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