STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQM59760.1[K] COG2207 AraC-type DNA-binding domain-containing proteins. (284 aa)    
Predicted Functional Partners:
AQM60197.1
Helix-turn-helix family protein; [K] COG1396 Predicted transcriptional regulators.
 
 
 0.811
rpoD
RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
   
 
 0.751
AQM58947.1
ABC transporter family protein; [V] COG1132 ABC-type multidrug transport system, ATPase and permease components.
 
  
 0.655
AQM61141.1
ABC transporter family protein; [V] COG1132 ABC-type multidrug transport system, ATPase and permease components.
 
  
 0.655
cobB-2
Sir2 family protein; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class U subfamily.
  
  
 0.618
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 
 0.583
AQM59169.1
UTRA domain protein; [K] COG2188 Transcriptional regulators.
 
  
 0.561
gmuR
[K] COG2188 Transcriptional regulators.
 
  
 0.560
AQM59848.1
[K] COG2207 AraC-type DNA-binding domain-containing proteins.
 
 
0.557
AQM61380.1
CM_mono_grmpos: chorismate mutase; [E] COG0077 Prephenate dehydratase.
  
  
 0.534
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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