STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQM61038.1glyoxalase/Bleomycin resistance /Dioxygenase superfamily protein; [E] COG0346 Lactoylglutathione lyase and related lyases. (126 aa)    
Predicted Functional Partners:
AQM59118.1
4Fe-4S binding domain protein; [C] COG0778 Nitroreductase.
  
  
 0.971
NPD11_23
Beta-lactamase superfamily domain protein; [R] COG0491 Zn-dependent hydrolases, including glyoxylases.
 
  
 0.925
ilvA
Threonine ammonia-lyase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA.
   
 0.824
trpB
Tryptophan synthase, beta subunit; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.
   
  0.821
sdaAA
Sda_alpha: L-serine dehydratase, iron-sulfur-dependent, alpha subunit; [E] COG1760 L-serine deaminase.
  
 
  0.804
sdaAB
Sda_beta: L-serine dehydratase, iron-sulfur-dependent, beta subunit; [E] COG1760 L-serine deaminase.
  
 
  0.803
lpdA
lipoamide_DH: dihydrolipoyl dehydrogenase; [C] COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes.
 
 
 0.562
AQM58947.1
ABC transporter family protein; [V] COG1132 ABC-type multidrug transport system, ATPase and permease components.
  
    0.523
AQM61141.1
ABC transporter family protein; [V] COG1132 ABC-type multidrug transport system, ATPase and permease components.
  
    0.523
tadA
Cytidine and deoxycytidylate deaminase zinc-binding region family protein; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
   
  
 0.516
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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