STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQM59350.1Glycosyl hydrolases 18 family protein; [G] COG3325 Chitinase. (887 aa)    
Predicted Functional Partners:
NPD11_609
Carbohydrate binding domain protein.
 
 
0.947
AQM59229.1
Glycosyl hydrolases 18 family protein; [G] COG3325 Chitinase; Belongs to the glycosyl hydrolase 18 family.
 
 
0.941
NPD11_901
ftsX-like permease family protein; [V] COG0577 ABC-type antimicrobial peptide transport system, permease component.
  
 
 0.897
smc
Chromosome segregation protein SMC; Required for chromosome condensation and partitioning. Belongs to the SMC family.
   
 
 0.892
AQM61083.1
Glycosyl hydrolases 18 family protein; [G] COG3325 Chitinase.
 
 
 
0.838
AQM61073.1
Hypothetical protein.
    
 
 0.799
AQM58757.1
Glycosyl hydrolases 18 family protein; [G] COG3325 Chitinase.
 
 
 
0.791
AQM60214.1
Glycosyl hydrolase family 20, catalytic domain protein; [G] COG3525 N-acetyl-beta-hexosaminidase.
 
   
 0.664
NPD11_745
Glycosyl hydrolase 85 family protein; [G] COG4724 Endo-beta-N-acetylglucosaminidase D.
 
  
 0.589
AQM60230.1
Hypothetical protein.
 
     0.465
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.