STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQM59643.1Type I phosphodiesterase / nucleotide pyrophosphatase family protein; [R] COG1524 Uncharacterized proteins of the AP superfamily. (422 aa)    
Predicted Functional Partners:
AQM61503.1
Hypothetical protein.
       0.570
AQM60604.1
Hypothetical protein.
       0.531
AQM60755.1
Conserved hypothetical protein; [S] COG4709 Predicted membrane protein.
       0.531
AQM58752.1
Transcriptional regulator PadR-like family protein; [K] COG1695 Predicted transcriptional regulators.
       0.531
asnS
asnS: asparagine--tRNA ligase; [J] COG0017 Aspartyl/asparaginyl-tRNA synthetases.
  
  
 0.418
AQM60431.1
choice_anch_A: choice-of-anchor A domain protein; [M] COG4932 Predicted outer membrane protein.
  
    0.410
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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