STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQM59993.1AAA domain family protein. (364 aa)    
Predicted Functional Partners:
yunB
spo_yunB: sporulation protein YunB.
  
     0.528
AQM61391.1
GerA spore germination family protein.
  
     0.513
ylbJ
spore_ylbJ: sporulation integral membrane protein YlbJ; [S] COG3314 Uncharacterized protein conserved in bacteria.
  
     0.494
AQM59795.1
Undecaprenyl diphosphate synthase family protein; [I] COG0020 Undecaprenyl pyrophosphate synthase.
  
     0.480
NPD11_339
Hypothetical protein.
  
    0.461
spoVAD
spore_V_AD: stage V sporulation protein AD.
  
    0.458
AQM60513.1
Bacterial extracellular solute-binding s, 3 family protein; [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; Belongs to the bacterial solute-binding protein 3 family.
       0.456
ytfJ
spore_ytfJ: sporulation protein YtfJ; [S] COG3874 Uncharacterized conserved protein.
  
     0.437
spoIIR
spore_II_R: stage II sporulation protein R.
  
     0.428
spoVT
spore_V_T: stage V sporulation protein T; [K] COG2002 Regulators of stationary/sporulation gene expression.
  
     0.422
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.