STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQM60304.1Asparaginase family protein; [E] COG1446 Asparaginase. (320 aa)    
Predicted Functional Partners:
AQM59915.1
various_sel_PB: selenoB, glycine/betaine/sarcosine/D-proline reductase family protein.
 
     0.862
AQM60830.1
Dipeptidaselike: dipeptidase family protein; [E] COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases.
  
  
 0.790
AQM59845.1
various_sel_PB: selenoB, glycine/betaine/sarcosine/D-proline reductase family protein.
 
     0.675
AQM59918.1
RDD family protein; [S] COG1714 Predicted membrane protein/domain.
 
    0.557
cutC-2
cutC family protein; Participates in the control of copper homeostasis. Belongs to the CutC family.
 
     0.528
AQM59932.1
Sigma-54 interaction domain protein; [KT] COG1221 Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain.
 
     0.514
AQM59256.1
PTS system, Lactose/Cellobiose specific IIB subunit; [G] COG1440 Phosphotransferase system cellobiose-specific component IIB.
 
     0.490
prfC
Peptide chain release factor 3; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily.
       0.440
AQM59642.1
Peptidase M28 family protein; [R] COG2234 Predicted aminopeptidases.
 
  
 0.429
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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