STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NPD11_248spore_YlmC_YmxH: sporulation, YlmC/YmxH family protein; [S] COG1873 Uncharacterized conserved protein. (96 aa)    
Predicted Functional Partners:
NPD11_249
Asp_kinase: aspartate kinase domain protein; [E] COG0527 Aspartokinases; Belongs to the aspartokinase family.
     
 0.808
AQM59053.1
Hypothetical protein.
  
     0.741
NPD11_247
Insulinase family protein; [R] COG0612 Predicted Zn-dependent peptidases; Belongs to the peptidase M16 family.
  
    0.716
NPD11_977
3'-5' exonuclease family protein; [L] COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases.
  
     0.711
AQM58934.1
lysM domain protein; [M] COG1388 FOG: LysM repeat.
  
     0.695
NPD11_367
spoIIIAH-like family protein.
  
     0.692
AQM60840.1
Conserved hypothetical protein; [S] COG3906 Uncharacterized protein conserved in bacteria.
  
     0.681
NPD11_99
Tetratricopeptide repeat family protein; [R] COG0457 FOG: TPR repeat.
  
     0.681
NPD11_250
Peptidase S49 family protein; [OU] COG0740 Protease subunit of ATP-dependent Clp proteases.
       0.671
AQM61406.1
37-kD nucleoid-associated bacterial family protein.
  
     0.643
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.