STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQM59786.1spore_ger_x_C: germination, Ger(x)C family protein. (375 aa)    
Predicted Functional Partners:
AQM61391.1
GerA spore germination family protein.
 
  
 0.963
AQM59477.1
2A0309: spore germination family protein.
 
  
 0.924
AQM58680.1
2A0309: spore germination family protein.
 
  
 0.777
AQM61491.1
GerA spore germination family protein.
 
  
 0.710
AQM60856.1
GGDEF: diguanylate cyclase domain protein; [T] COG2199 FOG: GGDEF domain.
       0.629
AQM60134.1
Conserved hypothetical protein; [S] COG5298 Uncharacterized protein conserved in bacteria.
  
     0.594
tlp
SASP_tlp: small, acid-soluble spore protein tlp; Belongs to the Tlp family.
  
     0.569
AQM58734.1
Hypothetical protein.
       0.565
NPD11_591
Hypothetical protein.
  
     0.554
NPD11_46
Metallo-beta-lactamase superfamily protein; [R] COG0491 Zn-dependent hydrolases, including glyoxylases.
  
     0.526
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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