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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQM59080.1ompA family protein; [M] COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins. (232 aa)    
Predicted Functional Partners:
AQM60988.1
Hypothetical protein.
 
 
 
 0.945
AQM59113.1
Hypothetical protein.
       0.716
AQM59238.1
[R] COG0457 FOG: TPR repeat.
  
 
 0.553
nifJ
Pyruvate:ferredoxin (flavodoxin) oxidoreductase; pyruv_ox_red: pyruvate:ferredoxin (flavodoxin) oxidoreductase; [C] COG1014 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit.
  
 
 0.536
AQM59166.1
Conserved hypothetical protein; [R] COG1451 Predicted metal-dependent hydrolase.
     
 0.503
AQM61518.1
Bacterial SH3 domain protein; [M] COG0791 Cell wall-associated hydrolases (invasion-associated proteins).
 
 
 0.493
AQM59557.1
Hypothetical protein.
       0.462
NPD11_993
TPR repeat family protein.
  
 
 0.452
rplT
Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
  
   0.440
AQM60824.1
[M] COG2834 Outer membrane lipoprotein-sorting protein.
  
 
 0.415
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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