STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQM61206.1ABC transporter family protein; [G] COG1129 ABC-type sugar transport system, ATPase component. (499 aa)    
Predicted Functional Partners:
AQM60075.1
[G] COG4211 ABC-type glucose/galactose transport system, permease component.
 
 0.990
NPD11_669
[G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components.
 
 0.974
AQM59396.1
Periplasmic binding domain protein; [G] COG1879 ABC-type sugar transport system, periplasmic component.
 
 
 0.952
AQM59313.1
Periplasmic binding domain protein; [G] COG1879 ABC-type sugar transport system, periplasmic component.
 
 
 0.904
rbsB
Periplasmic binding domain protein; [G] COG1879 ABC-type sugar transport system, periplasmic component.
 
 0.876
rbsD
rbsD / FucU transport family protein; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose.
 
  
 0.789
AQM61053.1
Periplasmic binding domain protein; [G] COG1879 ABC-type sugar transport system, periplasmic component.
 
 
 0.729
AQM60712.1
Hypothetical protein.
       0.689
rbsK
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
  
  
 0.611
NPD11_142
[G] COG0524 Sugar kinases, ribokinase family.
  
  
 0.576
Your Current Organism:
Clostridium baratii
NCBI taxonomy Id: 1561
Other names: ATCC 27638, Acuformis perennis, BCRC 14541, C. baratii, CCRC 14541, CCRC:14541, CCUG 24033, CIP 104306, Clostridium barati, Clostridium paraperfringens, Clostridium perenne, DSM 601, Inflabilis barati
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